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Mutant List | Parameter Help |
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Data Release Policy We (the Saccharomyces Cerevisiae Morphological Database project) herein make a collection of micrographs, processed images, and morphological parameter values of yeast mutants publicly available by providing image browsing and data mining functions before scientific publication. We reserve the exclusive right to publish, in a timely manner, the comprehensive analysis of all the data in the SCMD. Reserved analyses include the overall statistics of morphological parameters, and the comprehensive analysis of correlations between morphological parameters and other biological data such as gene ontology categories, gene expressions, gene localizations, and gene interactions. All users may search and use the SCMD database freely under the restrictions of the previous paragraph. Since the current version is still a preliminary one and may contain mistakes, users should use the data at their own risk and are not allowed to redistribute or repackage the data. When users publish the analysis of individual genes using the data of this site, they should include the acknowledgement "The SCMD database has been provided freely by the University of Tokyo for use in this publication/correspondence only." Finally, we are continuing to improve the SCMD database; therefore, any feedback information from the users should be highly welcomed. Download Tab-separated ORF Parmeter Data Sheets You also can see partial previews of the data sheets below from the ORF Parmeter Sheet page.
Notice!
These files are too large to open with Microsoft Excel (version 2003 or prev.), OpenOffice2.0, etc. Thus,
do not try to open these links above directly from your browser, but download them as files (e.g. right click the links, and choose save as ...).
To handle such large files, we recommend you to use scripting languages such as Perl or Ruby, etc. These programming languages are designed to be easy to learn, compared to the other traditional programming languages (e.g. C/C++, Java, etc...) Here is a sample scirpt written in Ruby that picks some specific columns from the tab-separated datasheet. # colpicker.rb # create a hash that maps a ORF parameter name to its col number col_name = gets.chomp.split(/\t/) col_map = {} for i in 0..col_name.length col_map[col_name[i]] = i end # pick up col data in name, A119 and DCV198_C. output_param = [ "name", "A119", "DCV198_C" ] # output col names puts output_param.join(", ") # pick up the specific columns while gets cols = chomp.split(/\t/) line = [] output_param.each do |param| line << cols[col_map[param]] if defined? col_map[param] end puts line.join(", ") end A usage example :
> ruby colpicker.rb < wildtype_analysis.tab name, A119, DCV198_C HIS3-001, 0.16753926701570682, 0.32862727076517567 HIS3-010, 0.14772727272727273, 0.32150172876549693 HIS3-100, 0.14912280701754385, 0.41356787768258824 HIS3-011, 0.17721518987341772, 0.32968679784387406 HIS3-012, 0.1487603305785124, 0.34199674105762645 HIS3-013, 0.13725490196078433, 0.34273099314712885 HIS3-014, 0.09774436090225563, 0.2997897598898407 HIS3-015, 0.22727272727272727, 0.3182409384459814 HIS3-016, 0.1610738255033557, 0.34367878038965255 HIS3-017, 0.16666666666666666, 0.3907860916398882 HIS3-018, 0.15966386554621848, 0.27215895624014746 HIS3-019, 0.11538461538461539, 0.37650734396716856 ... |