SCMD Saccharomyces Cerevisiae Morphological Database
Keywords: (ex. rad52, polarisome)

Publications

  • Okada H, Ohnuki S, Roncero C, Konopka JB, Ohya Y. Distinct roles of cell wall biogenesis in yeast morphogenesis as revealed by multivariate analysis of high-dimensional morphometric data. Mol Biol Cell. 2014 Jan. (PubMed)

  • Yoshida M, Ohnuki S, Yashiroda Y, Ohya Y. Profilin is required for Ca2+ homeostasis and Ca2+-modulated bud formation in yeast. Mol Genet Genomics. 2013 Aug. (PubMed)

  • Matsumoto R, Suzuki K, Ohya Y. Organelle acidification is important for localisation of vacuolar proteins in Saccharomyces cerevisiae. Protoplasma. 2013 Dec. (PubMed)

  • Iwaki A, Ohnuki S, Suga Y, Izawa S, Ohya Y. Vanillin inhibits translation and induces messenger ribonucleoprotein (mRNP) granule formation in Saccharomyces cerevisiae: application and validation of high-content, image-based profiling. PLoS One. 2013 Apr 24. (PubMed)

  • Yvert G, Ohnuki S, Nogami S, Imanaga Y, Fehrmann S, Schacherer J, Ohya Y. Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast. BMC Syst Biol. 2013 Jul 3. (PubMed)

  • Ohnuki S, Kobayashi T, Ogawa H, Kozone I, Ueda JY, Takagi M, Shin-Ya K, Hirata D, Nogami S, Ohya Y. Analysis of the biological activity of a novel 24-membered macrolide JBIR-19 in Saccharomyces cerevisiae by the morphological imaging program CalMorph. FEMS Yeast Res. 2012 May. (PubMed)

  • Watanabe D, Nogami S, Ohya Y, Kanno Y, Zhou Y, Akao T, Shimoi H. Ethanol fermentation driven by elevated expression of the G1 cyclin gene CLN3 in sake yeast. J Biosci Bioeng. 2011 Dec. (PubMed)

  • Yamagishi H, Ohnuki S, Nogami S, Ogata T, Ohya Y. Role of bottom-fermenting brewer's yeast KEX2 in high temperature resistance and poor proliferation at low temperatures. J Gen Appl Microbiol. 2010 Aug. (PubMed)

  • Ohnuki S, Oka S, Nogami S, Ohya Y. High-content, image-based screening for drug targets in yeast. PLoS One. 2010 Apr 14. (PubMed)

  • Okada H, Abe M, Asakawa-Minemura M, Hirata A, Qadota H, Morishita K, Ohnuki S, Nogami S, Ohya Y. Multiple functional domains of the yeast l,3-beta-glucan synthase subunit Fks1p revealed by quantitative phenotypic analysis of temperature-sensitive mutants. Genetics. 2010 Apr. (PubMed)

  • Watanabe M, Watanabe D, Nogami S, Morishita S, Ohya Y. Comprehensive and quantitative analysis of yeast deletion mutants defective in apical and isotropic bud growth. Curr Genet. 2009 Aug.(PubMed)

  • Negishi T, Nogami S, Ohya Y. Multidimensional quantification of subcellular morphology of Saccharomyces cerevisiae using CalMorph, the high-throughput image-processing program. J Biotechnol. 2009 May 20. (PubMed)

  • Ohnuki S, Nogami S, Ohya Y. A microfluidic device to acquire high-magnification microphotographs of yeast cells. Cell Div. 2009 Mar 24. (PubMed)

  • Kono K, Nogami S, Abe M, Nishizawa M, Morishita S, Pellman D, Ohya Y. G1/S cyclin-dependent kinase regulates small GTPase Rho1p through phosphorylation of RhoGEF Tus1p in Saccharomyces cerevisiae. Mol Biol Cell. 2008 Apr. (PubMed)

  • Ohnuki S, Nogami S, Kanai H, Hirata D, Nakatani Y, Morishita S, Ohya Y. Diversity of Ca2+-induced morphology revealed by morphological phenotyping of Ca2+-sensitive mutants of Saccharomyces cerevisiae. Eukaryot Cell. 2007 Mar 9. (PubMed)

  • Nogami S, Ohya Y, Yvert G. Genetic complexity and quantitative trait loci mapping of yeast morphological traits. PLoS Genet. 2007 Feb 23;3(2):e31. (PubMed)

  • Kikuchi Y, Mizuuchi E, Nogami S, Morishita S, and Ohya, Y. Involvement of Rho-type GTPase in control of cell size in Saccharomyces cerevisiae. FEMS Yeast Research. 2007 Feb 16. (PubMed)

  • Suzuki G, Sawai H, Ohtani M, Nogami S, Sano-Kumagai F, Saka A, Yukawa M, Saito T L, Sese J, Hirata D, Morishita S, and Ohya Y. Evaluation of image processing programs for accurate measurement of budding and fission yeast morphology. Curr Genet. 2006 Jan 6;:1-11

  • Yoshikazu Ohya, Jun Sese(*), Masashi Yukawa(*), Fumi Sano, Yoichiro Nakatani, Taro L. Saito, Ayaka Saka, Tomoyuki Fukuda, Satoru Ishihara, Satomi Oka, Genjiro Suzuki, Machika Watanabe, Aiko Hirata, Miwaka Ohtani, Hiroshi Sawai, Nicolas Fraysse, Jean-Paul Latge, Jean M. Francois, Markus Aebi, Seiji Tanaka, Sachiko Muramatsu, Hiroyuki Araki, Kintake Sonoike, Satoru Nogami, and Shinichi Morishita. High-dimensional and large-scale phenotyping of yeast mutants. PNAS published December 19, 2005, 10.1073/pnas.0509436102 ( Genetics ) (* equally contributed authors) http://www.pnas.org/cgi/content/abstract/0509436102v1


  • Data Mining Tools for The Saccharomyces Cerevisiae Morphological Database. Taro L. Saito(*), Jun Sese(*), Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya and Shinichi Morishita. Nucleic Acids Research 2005. Vol. 33 (Web Server Issue). (* equally contributed authors) http://nar.oxfordjournals.org/cgi/content/abstract/33/suppl_2/W753


  • Masaya Suzuki, Ryoji Igarashi, Mizuho Sekiya, Takahiko Utsugi, Shinichi Morishita, Masashi Yukawa, Yoshikazu Ohya. Dynactin is involved in a checkpoint to monitor cell wall synthesis in Saccharomyces cerevisiae. Nature Cell Biology 6, 861 - 871, 2004.


  • Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, and Shinichi Morishita: Development of Image Processing Program for Yeast Cell Morphology. Journal of Bioinformatics and Computational Biology Vol. 1, No. 4 695-709, 2004.
    http://www.worldscinet.com/jbcb/jbcb.shtml


  • Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, and Shinichi Morishita. SCMD: Saccharomyces Cerevisiae Morphological Database. Nucl. Acids. Res. 32: D319-D322 (2004)